As big data emerges as a force in science,2,3 so, too, do new, onerous tasks for researchers. Data from specialized instrumentation, numerical simulations, and downstream manipulations must be collected, indexed, archived, shared, replicated, and analyzed. These tasks are not new, but the complexities involved in performing them for terabyte or larger datasets (increasingly common across scientific disciplines) are quite different from those that applied when data volumes were measured in kilobytes. The result is a computational crisis in many laboratories and a growing need for far more powerful data-management tools, yet the typical researcher lacks the resources and expertise to operate these tools.
The answer may be to deliver research data-management capabilities to users as hosted "software as a service," or SaaS,18 a software-delivery model in which software is hosted centrally and accessed by users using a thin client (such as a Web browser) over the Internet. As demonstrated in many business and consumer tools, SaaS leverages intuitive Web 2.0 interfaces, deep domain knowledge, and economies of scale to deliver capabilities that are easier to use, more capable, and/or more cost-effective than software accessed through other means. The opportunity for continuous improvement via dynamic deployment of new features and bug fixes is also significant, as is the potential for expert operators to intervene and troubleshoot on the user's behalf.
We report here on a research data-management system called Globus Online, or GO, that adopts this approach, focusing on GO's data-movement functions ("GO-Transfer"). We describe how GO leverages modern Web 2.0 technologies to provide intuitive interfaces for fire-and-forget file transfers between GridFTP end-points1 while leveraging hosting for automatic fault recovery, high performance, simplified security configuration, and no client software installation. We also describe a novel approach for providing a command-line interface (CLI) to SaaS without distributing client software and Globus Connect to simplify installation of a personal GridFTP server for use with GO. Our experiments show low overhead for small transfers and high performance for large transfers, relative to conventional tools.
Adoption of this new service has been notable. One year after product launch, November 2010, more than 3,000 registered users had in aggregate moved more than two petabytes (2×1015B) and 150 million files; numerous high-performance computing (HPC) facilities and experimental facilities recommend GO to their users; and several "science gateways" are integrating GO as a data upload/download solution. GO has also been adopted as a foundational element of the National Science Foundation's new (as of 2011) Extreme Science and Engineering Discovery Environment (XSEDE) supercomputer network (http://www.xsede.org/).
Researchers often must copy many files with potentially large aggregate size among two or more network-connected locations, or "endpoints," that may or may not include the computer from which the transfer command is issued; that is, third-party transfers may be (indeed, frequently are) involved. Our goal in designing GO is a solution that provides extreme ease-of-use without compromising reliability, speed, or security. A 2008 report by Childers et al.5 of Argonne National Laboratory makes clear the importance of usability. In particular, failure recovery is often a human-intensive process, as reported by Childers et al.5: "The tools that we use to move files typically are the standard Unix tools included with ssh... it's just painful. Painful in the sense of having to manage the transfers by hand, restarting transfers when they failall of this is done by hand."
A common question about GO is whether data can be moved more effectively through the physical movement of media rather than through communication over networks.
In addition, datasets may have nested structures and contain many files of different size (see the sidebar "Other Approaches"). Source and destination may have different security requirements and authentication interfaces. Networks and storage servers may suffer transient failures. Transfers must be tuned to exploit high-speed research networks. Directories may have to be mirrored across multiple sites, but only some files differ between source and destination. Firewalls, Network Address Translation, and other network complexities may have to be addressed. For these and other reasons, it is not unusual to hear of even modest-scale wide-area data transfers requiring days of careful "babysitting" or of being abandoned for high-bandwidth but high-latency (frequently labor-intensive and error-prone) "sneakernet."11
Why not just leave data where it is created? Such an option is certainly preferred when possible, and we may hope that over time moving computation to data rather than the other way round will be more common. However, in practice, data scientists often find data is "in the wrong place" and thus must be moved for a variety of reasons. Data may be produced at a location (such as a telescope or sensor array) where large-scale storage cannot be located easily. It may be desirable to collocate data from many sources to facilitate analysisa common requirement in, say, genomics. Remote copies may be required for disaster recovery. Data analysis may require computing power or specialized computing systems not available locally. Policy or sociology may require replication of data sets in distinct geographical regions; for example, in high-energy physics, all data produced at the Large Hadron Collider, Geneva, Switzerland, must essentially be replicated in the U.S. and elsewhere for independent analysis. It is also frequently the case that the aggregate data-analysis requirements of a community exceed the analysis capacity of a data provider, in which case data must be downloaded for local analysis. This is the case in, for example, the Earth System Grid, which delivers climate simulation output to its 25,000 users worldwide.
Another common question about GO is whether data can be moved more effectively through the physical movement of media rather than through communication over networks. After all, no network can exceed the bandwidth of a FedEx truck. The answer is, again, that while physical shipment has its place (and may be much cheaper if the alternative is to pay for a high-speed network connection), it is not suitable in all situations. Latency is high, and so is the human overhead associated with loading and unloading media, as well as with keeping track of what has been shipped. Nevertheless, it could be feasible to integrate into GO methods for orchestrating physical shipment when it is determined to be faster and/or more cost-effectiveas with Cho's and Gupta's Pandora ("People and networks moving data around") system.6
The Computation Institute at the University of Chicago and Argonne National Laboratory operates GO as a highly available service (http://www.globusonline.org/) to which users submit data-movement and synchronization requests. A typical transfer request proceeds as follows: A user authenticates with GO and submits a request. GO records the request into its state database, inspects the request to determine what endpoints are involved, and if necessary prompts the user to provide credentials GO can use to interact with those endpoints on the user's behalf. GO then establishes authenticated GridFTP control channels with each endpoint and issues the appropriate GridFTP commands to transfer the requested files directly between the endpoints. GO monitors the transfer progress and updates transfer state in the state database. This information can be used to restart transfers after faults and report progress to the user. GO keeps attempting a failed request periodically until the task deadline is reached or the user cancels the request. When the transfer completes or an unrecoverable fault is encountered the user is notified via email.
GO supports a friendly, intuitive Web GUI for ad hoc and less-technical users; a CLI for use by more advanced users and for scripting; and a Representational State Transfer (REST) application programming interface (API) facilitating integration for system builders that also supports the GO Web interface. The table here lists GO's primary transfer-management functions. Additional endpoint-management functions provide for the creation, deletion, configuration, activation, and deactivation of logical endpoints. Other functions support administrative tasks (such as listing available commands, reviewing command history, and obtaining command help).
A CLI supports client-side scripting; for example, a script that, each evening, transfers new files created during the day to a remote repository or that automatically moves output from an analysis job back to a local machine. A CLI typically requires installation of client-side libraries, though it is counter to the key SaaS tenet of not requiring client software installation to use the service. To obviate having to install software, the GO system provides all GO users with a restricted shell, to which they can
ssh to execute commands. Thus, a user, Joe, can write
scp alcf#dtn:~/myfile nersc#dtn:~/myfile
to copy myfile from source
alcf#dtn to destination
nersc#dtn. The boldface text invokes the GO
scp, or secure copy, command, mirroring the syntax of the popular
scp. It supports many regular
scp options, plus some additional features, and is much faster because it invokes GridFTP transfers. Alternatively, Joe can first ssh to http://cli.globusonline.org/, then issue a series of commands directly:
joe$ ssh cli.globusonline.org
Welcome to globusonline.org, ian.
$ scp alcf#dtn:~/myfile nersc#dtn:~/myfile
Enter MyProxy pass phrase: ********
This example command also illustrates how endpoints can define logical names for physical nodes. For example,
alcf#dtn denotes the datatransfer nodes running GridFTP servers at the Argonne Leadership Computing Facility (ALCF: http://www.alcf.anl.gov/). Sites can define and publish their own endpoint definitions (such as
alcf#dtn, nersc#dtn); users are able to define custom endpoint definitions as well (such as
mylaptop, myserver). More than 300 such endpoint definitions have been defined, incorporating many major research computing systems in the U.S. and elsewhere worldwide.
An important GO feature is the ability to handle transfers across multiple security domains with multiple user identities. Unlike many systems, including most previous Grid file-transfer services, GO does not require a single, common security credential across all transfer endpoints. Rather, it assumes users have many identities for use with different service providers and that GO's job is to ensure the right identities are brought to bear at the right time for any transfer and do so in a way that is easy for users to understand.
To this end, all users have GO accounts where they easily configure their profile with various identities; for example, they can register their MyProxy Certification Authority (CA)16 identities (such as for NERSC and other computing centers using the approach), OAuth protocol12 identities (such as for ALCF, the NSF XSEDE network of supercomputer centers, and Facebook), OpenID identities (such as for Google), Shibboleth10 identities (such as for campus credentials), and X.509 identities (such as from the U.S. Department of Energy Grids CA and International Grid Trust Federation-certified CA).
Though GO stores identities, it does not store passwords; rather, it knows only the user name so it can prompt for the appropriate information when that identity is needed. In addition, identities can be configured as "federated identities" the user uses to authenticate with GO; for example, users who have already authenticated their browser session with an OpenID, OAuth, or Shibboleth identity can use GO without having to authenticate further, and X.509 (proxy) identities can be used to authenticate with the GO Web site, CLI, and REST API.
GO keeps track of what security credentials are required by the different endpoints with which users may wish to communicate. Then, where possible, it caches information it can use to facilitate access. For example, assume user U must provide X.509 credential U-A to access endpoint A and X.509 credential U-B to access endpoints B1 and B2. To perform a file transfer from A to B1, as requested by the user, GO requires short-term (typically 12-hour) X.509 proxy credentials22 it can use to authenticate the user request to the GridFTP servers running at endpoints A and B1. If GO does not have such credentials, it prompts the user for them when the user requests the transfer. Alternatively, a user (or script) can proactively push X.509 proxy credentials to GO for use with specific endpoints.
When GO has the needed credentials it proceeds with the transfer, caching them until they expire or are explicitly deleted by the user. GO also uses the same user proxy credential for endpoints that have the same default MyProxy server, so users need not enter the same password multiple times. If a credential expires before the transfer completes, GO notifies the user via email that the user must re-authenticate. Until such time as the credential is renewed, the transfer is suspended.
SaaS requires reliability and scalability, continuing to operate despite the failure of individual components and behaves appropriately as usage grows. To this end, the GO team applies methods commonly used by SaaS providers, running GO on a commercial cloud provider, Amazon Web Services (AWS). The GO implementation uses a combination of Amazon Elastic Compute Cloud (EC2), Amazon Elastic Load Balancing, and Amazon Simple Storage Service (S3).
The GO implementation involves platform services, which provide user, profile, and group-management functions, and the file-transfer service that implements the data-movement functionality that is the focus of this article. The GO team runs the platform services on a collection of EC2 instances across several availability zones in Amazon's U.S. East region (located in Virginia), including Web server, load balancer, database, and backup. The file-transfer service runs on a collection of EC2 instances hosted in the U.S. East region, including of transaction database, transfer agents, history database, transfer REST API server, CLI server, and backup. In addition, the GO team runs two Nagios servers on EC2 instances, one in the U.S. East region to monitor all other instances, the other in the U.S. West region to monitor the health of the primary Nagios server. The GO team also uses the Chef configuration-management tool for provisioning all servers. The vast majority of GO is programmed in Python, running on Ubuntu Linux servers, with Cassandra and Postgres databases.
Figure 1 is a somewhat abstracted view of the GO implementation, showing the user gateway servers supporting interaction between users and the system via Web GUI, CLI, and REST interfaces; the worker processes orchestrating data transfers and other tasks (such as notifying users of changes in state); and the profiles and state database storing user profiles, request state, and endpoint information.
The authors' current thinking on availability is that that the research community needs between three and four 9s (99.9%99.99%), corresponding to between one and 10 minutes downtime per week. Longer than 10 minutes lack of availability can be problematic for users employing GO as part of time-critical work processes (such as in astronomy data-processing pipelines). This requirement is a primary reason the GO team hosts GO on AWS rather than on a research computing facility, which, in our experience, provides closer to two-9s availability when occasional maintenance shutdowns are taken into account.
Globus Connect (Multi-User)
GO users need not install software to request transfers between remote GridFTP servers. However, software installation is required if a source or destination computer does not have GridFTP installed, as when, for example, transferring data to/from a user's computer.
To address this need, we introduced in early 2011 Globus Connect, a one-click download-and-install application for Linux, MacOS, and Windows. Globus Connect consists of a GridFTP server that runs as the user (rather than root from
inetd like a typical GridFTP server) and a GSI-OpenSSH client configured to establish an authenticated connection to a GO relay server, so as to tunnel GridFTP control channel requests from GO. This Globus Connect GridFTP server uses only outbound data-channel connections. GO can direct transfer requests to/from a Globus Connect instance via the control-channel tunnel. Thus, to request a transfer to/from the computer on which they have installed Globus Connect, users interact with GO just as they would request any other transfer (see Figure 2). GO relays the request via the tunnel to the Globus Connect server, which then executes the transfer.
Globus Connect establishes only outbound connections and thus can work behind a firewall or other network interface device that does not allow for inbound connections. The Globus Connect server is stateless and thus can be started and stopped at will; all state associated with transfers is maintained by GO. Autoupdate means the user need not maintain the software over time.
The GO team also streamlined the process of standing up a GridFTP server as a shared resource by introducing Globus Connect Multi-User (GCMU), simplifying the process of connecting a shared server or cluster to GO. With GCMU a resource owner can quickly set up a GO endpoint on any server that can then be accessed by multiple users for remote data movement. GCMU packages a GridFTP server, MyProxy server, and MyProxy Online CA pre-configured for GO use, requiring only a few steps to install and use. A growing number of research facilities users (such as the University of Colorado, University of Michigan, Oak Ridge National Laboratory, and Advanced Photon Source) use GCMU to make their resources accessible to remote users.
Globus Connect also incorporates user-friendly methods for automating the process of generating, installing, and configuring the certificate required for a Globus Connect installation. It uses an online private CA incorporated into GO to generate a new service certificate when a user adds a Globus Connect endpoint. Users copy a secret "setup key" from the GO Web site to the Globus Connect setup window to securely pair it with their new endpoint definition. Globus Connect uses the setup key as a one-time-use token to download the certificate, private key, and GridFTP gridmap configuration over a secure GSI-OpenSSH connection. GO can then authenticate to the Globus Connect instance and be sure it is talking to the correct one.
GridFTP client interfaces allow users to optimize transfer performance by setting parameters (such as TCP buffer size, number of outstanding requests, or "pipelining," number of concurrent control channel connections, or "concurrency," and number of TCP channels used for data movement, or "parallelism"). However, few users have the experience and time needed to apply these settings effectively.
GO obviates the need for user tuning by applying heuristics to set parameters based on the number and size of files in a transfer. Upon arrival of a recursive transfer request, GO crawls the directory to find the files to transfer, determining file size in the process. It then sorts them by size and performs the transfer in chunks, setting parameters for each chunk according to the average size of its files. If a chunk has more than 100 files and an average file size smaller than 50MB, GO applies small settings, making use of pipelining: Specifically, concurrency=2 files in transit at once, parallelism=2 sockets per file, and pipelining=20 requests outstanding at once. If all files in a chunk are larger then 250MB, GO applies large settings that use more parallelism and moderate pipelining: concurrency=2, parallelism=8, and pipelining=5. In all other cases, the default setting is used: concurrency=2, parallelism=4, and pipelining=10. When a Globus Connect or GCMU endpoint is used as the destination in a GO transfer, then stream mode (not mode E, which allows for out-of-order transmission) must be used, and concurrency is the only optimization that can be applied. When using steam mode, then for small file chunks, GO sets concurrency=8.
These simple heuristics have proved effective but can surely be improved; for example, GO could be extended to manipulate the TCP buffer size (such as on the basis of roundtrip-time measurements), select alternative transport protocols, or reserve the network.
Dispatching requests to a hosted service rather than executing them directly on a user's computer introduces temporal overhead due to the need to communicate the request to the GO user gateway operating on a remote computer. To evaluate this overhead, we conducted tests (in 2011), issuing 100 consecutive requests to transfer a 1B file between two locations, using
scp first, then GO
scp dispatched to GO via SSH. We measured total times of 93 and 273 seconds, respectively, an average per-request cost of 0.93 seconds for
scp and 2.73 seconds for GO
scp. We concluded that the request-setup cost associated with the use of GO is ~1.8 seconds. This overhead is acceptable for many data-transfer applications, though certainly not for all. Note that users who want to request many transfers will normally do so with a single request. If users want to perform consecutive small requests, they may choose to log into the GO CLI gateway and issue the commands directly, thus avoiding the per-request ssh cost.
Though GO stores identities, it does not store passwords; rather, it knows only the user name and how to use it, so it can prompt for the appropriate information when that identity is needed.
To evaluate GO's performance-optimization logic in practical situations, we also conducted tests (in 2011) to compare GO performance when transferring large quantities of data between pairs of endpoints with that achieved using
scp and the globus-url-copy (GUC) client. As
scp is known to perform poorly, particularly over wide-area networks, we included this option in the test primarily as a sanity check; if GO is not better than
scp, then something is wrong. GUC, on the other hand, drives GridFTP transfers and so represents a fairer comparison. However, in its default configuration (which, Globus developers tell us, many users use unchanged) GUC does not employ optimizations used by GO; for example, GUC does not enable concurrency, parallelism, pipelining, or data channel caching. This comparison thus permitted evaluation of the performance gains many users expect from GO. We also compared GO against GUC with parameters tuned by an expert to maximize performance
tuned-guc in the results.
Figure 3 charts results of GO-based data transfer in 2011 over a high-speed wide-area networkESNet, the Energy Sciences Network, http://www.es.net/between two high-performance parallel storage systems, and Figure 4 between local-instance storage of two EC2 instances within different Amazon Availability Zones in a single geographic region to approximate a transfer over a campus network. Figure 3 gives results both between a single data-transfer node (DTN) at ALCF and NERSC ("go-single-ep") and (the default configuration) using the two DTNs supported by ALCF and NERSC ("go"). Each DTN is a fast server with a 10Gb/s network to ESnet and a fast local connect to each site's GPFS parallel file system. Meanwhile,
scp performs poorly for all data transfers, and GUC, with its default configuration, performs poorly for all data transfer sizes over the wide area, as well as for small files in the local area. (The default configuration clearly requires improvement.) Fortunately, tuned-guc performs better than untuned GUC in almost all cases. In the wide-area case, it does less well than GO for smaller files, probably because GO drives GridFTP pipelining more aggressively, due to the improved pipelining support in GO's GridFTP client. However,
tuned-guc does better than GO for large files, though GO performance can be tuned further. Note, GO transfers to a two-DTNs vs. a single-DTN are not substantially different, except for the largest transfer. We conclude that the bottleneck is not the DTNs but either the network or local storage.
Exploding data volumes are transforming many researchers into data scientists, with urgent need for more capable, efficient data-management tools. SaaS may represent the means by which such tools are provided cost-effectively, with GO as a first step in that direction. A hosted data-movement service with intuitive interfaces, automatic fault recovery, high performance, and easy-to-use security, it has already (since its introduction, late 2010) won enthusiastic adoption in the world of big-data science applications. Many operators of scientific facilities worldwide recommend GO to their users. Our experiments show GO can achieve high performance and exceptional reliability in a variety of settings, with low per-transfer overhead and bandwidth rarely exceeded in human-tuned transfers.
These positive results have encouraged us to expand GO to address other research data-management problems. Recognizing that a notable reason for moving data is to share it with other scientists, the GO development team is adding data-sharing support like that provided by DropBox. To simplify the specification of sharing policies, GO developers have integrated group management. In turn, these mechanisms provide a foundation on which can be built a range of other capabilities, notably support for collaborative tools.
We thank Vijay Anand, Rachana Ananthakrishnan, Joshua Boverhof, Kyle Chard, Ann Chervenak, Paul Davé, Martin Feller, Daniel Gunter, Thomas Howe, Lukasz Lacinski, Steven Link, Ravi Madduri, Daniel Morgan, Michael Russell, Eugene Sadhu, Mei-Hui Su, Vas Vasiliadis, Vanamala Venkataswamy, and Andrew Zich for their work on GO, as well as many users for helpful suggestions. This work was supported in part by DOE DE-AC02-06CH11357; NSF OCI-534113; and NIH NCRR 1 U24 RR025736-01.
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I am thankful to all authors of this good article, though its title has nothing to do with the content. The article itself is only about the data-movement; this purpose is clearly announced at the beginning of the second page and the whole text gives a lot of information about the declared subject: â€œWe report here on a research data-management system â€¦ focusing on GOâ€™s data-movement functions.â€
Software for data scientists means a set of programs which help scientists to look through and to analyse those huge amounts of data; at least, this is my understanding of the underlined term. The whole life cycle of data can be divided into three stages: obtaining data, transferring it to another location (for one of the reasons which are mentioned in the article), and its analysis. This article describes some results on an interesting work on the second stage and by the way mentions the software for analysis as a service.
For those who provide the software as a service there are certainly big economical pluses; for scientists, who use such service, there are no pluses at all. Analysis of data and especially analysis of huge amounts of data is so individual that it requires absolutely individualized programs. For this reason nearly every laboratory, institute, or university develops a lot of its own software. Individualized programs must be developed in a different way from currently used; the new programs are not more costly in design but they are different in use. These user-driven applications give scientists the freedom in organizing their work; the same level of freedom which we had years (or decades) ago while working with paper and pen but now all benefits of computers are added to it. I wrote about it in a small article in CiSE (July/August 2011, v.13, N4, pp.79-84) and with much more details in a book; article contains a link to this book.
Data transferring and data analysis are different problems but strongly connected by this data flow. Usually the same people deal with both problems so I though that it might be interesting to them to know about the new results in the related area; these results can help them in their work.
Thank you for interesting results in data transferring area.
Dr. Sergey Andreyev,
Department of Mathematical Modelling, Heat and Mass Transfer Institute
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